IDEA-157177 IDEA Ultimate 2016.1.3 cannot resolve transitive dependencies in multi module gradle project

platform/external-system-impl/src/com/intellij/openapi/externalSystem/service/project/manage/LibraryDependencyDataService.java

@@ -203,6 +203,8 @@ public class LibraryDependencyDataService extends AbstractDependencyDataService<
         if (existing != null) {
           toImport.remove(existing);
           orderEntryDataMap.put(entry, existing);
+          libraryOrderEntry.setExported(existing.isExported());
+          libraryOrderEntry.setScope(existing.getScope());
         }
         else if (!hasUnresolvedLibraries) {
           // There is a possible case that a project has been successfully imported from external model and after

plugins/gradle/jps-plugin/src/org/jetbrains/jps/gradle/model/impl/JpsGradleDependenciesEnumerationHandler.java

@@ -57,7 +57,7 @@ public class JpsGradleDependenciesEnumerationHandler extends JpsJavaDependencies
 
   @Override
   public boolean shouldProcessDependenciesRecursively() {
-    return false;
+    return !myResolveModulePerSourceSet;
   }
 
   public static class GradleFactory extends Factory {

plugins/gradle/src/org/jetbrains/plugins/gradle/execution/GradleOrderEnumeratorHandler.java

@@ -86,7 +86,7 @@ public class GradleOrderEnumeratorHandler extends OrderEnumerationHandler {
 
   @Override
   public boolean shouldProcessDependenciesRecursively() {
-    return false;
+    return !myResolveModulePerSourceSet;
   }
 
   @Override